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Experiments

This page summarizes the experiments across multiple species and multiple experiments.

  • The Data column contains a link to an Excel file for that experiment. Values are in TPM (Transcripts Per Million) estimates, see Bioinformatics methods for details.
  • The Details column links to a page detailing the experimental methods. It includes a list of GEO and SRA accessions used.
  • The UCSC track hub column links to the UCSC genome browser which displays all tracks for the experiment into a configurable track hub.

Species Experiment name Library type Search Data Details UCSC Track Hub
Chicken Pineal gland and retina; time series; constant darkness total RNA Search Download Details Link
Human Pineal gland; day and night total RNA Search Download Details Link
Mouse Pineal gland and retina, retina and mixed tissue; day and night; Eya2 KO total RNA Search Download Details Link
Rat_single_cell_day_night Single cell RNA sequencing Day & Night single-cell RNA Search Download Details
Rat_single_cell Single cell RNA sequencing Day single-cell RNA Search Download Details
Rat Pineal gland; day and night; and mixed tissue, day; polyA total RNA Search Download Details Link
Rat Pineal; Lhx4, Bsx total RNA Search Download Details Link
Rat Pineal gland development; day and night total RNA Search Download Details Link
Rat Pineal gland (RP), retina (RR) and mixed tissue (RX); 24-hr time series total RNA Search Download Details Link
Rat Pineal gland; day and night; and mixed tissue, day; Ribominus total RNA Search Download Details Link
Rat Pineal gland; superior cervical decentralization (DCN) or ganglionectomy (SCGX); day and night total RNA Search Download Details Link
Rat Pineal gland in vitro; norepinephrine (NE) or dibutyl cyclic AMP (DBcAMP) total RNA Search Download Details Link
Rat Pineal gland marker genes; day and night total RNA Search Download Details Link
Rat_miRNA Pineal gland ZT miRNA; day and night miRNA Search Download Details Link
Rhesus Pineal gland, retina and mixed tissue; time series total RNA Search Download Details Link
Zebrafish Pineal gland; time series; constant darkness total RNA Search Download Details Link
Zebrafish Eye, pineal gland and mixed tissue; day and night total RNA Search Download Details Link