Experiments
This page summarizes the experiments across multiple species and multiple experiments.
- The Data column contains a link to an Excel file for that experiment. Values are in TPM (Transcripts Per Million) estimates, see Bioinformatics methods for details.
- The Details column links to a page detailing the experimental methods. It includes a list of GEO and SRA accessions used.
- The UCSC track hub column links to the UCSC genome browser which displays all tracks for the experiment into a configurable track hub.
| Species | Experiment name | Library type | Search | Data | Details | UCSC Track Hub |
| Chicken | Pineal gland and retina; time series; constant darkness | total RNA | Search | Download | Details | Link |
| Human | Pineal gland; day and night | total RNA | Search | Download | Details | Link |
| Mouse | Pineal gland and retina, retina and mixed tissue; day and night; Eya2 KO | total RNA | Search | Download | Details | Link |
| Rat_single_cell_day_night | Single cell RNA sequencing Day & Night | single-cell RNA | Search | Download | Details | |
| Rat_single_cell | Single cell RNA sequencing Day | single-cell RNA | Search | Download | Details | |
| Rat | Pineal gland; day and night; and mixed tissue, day; polyA | total RNA | Search | Download | Details | Link |
| Rat | Pineal; Lhx4, Bsx | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland development; day and night | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland (RP), retina (RR) and mixed tissue (RX); 24-hr time series | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland; day and night; and mixed tissue, day; Ribominus | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland; superior cervical decentralization (DCN) or ganglionectomy (SCGX); day and night | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland in vitro; norepinephrine (NE) or dibutyl cyclic AMP (DBcAMP) | total RNA | Search | Download | Details | Link |
| Rat | Pineal gland marker genes; day and night | total RNA | Search | Download | Details | Link |
| Rat_miRNA | Pineal gland ZT miRNA; day and night | miRNA | Search | Download | Details | Link |
| Rhesus | Pineal gland, retina and mixed tissue; time series | total RNA | Search | Download | Details | Link |
| Zebrafish | Pineal gland; time series; constant darkness | total RNA | Search | Download | Details | Link |
| Zebrafish | Eye, pineal gland and mixed tissue; day and night | total RNA | Search | Download | Details | Link |